GWAS correlation estimate

Pre-computed Gwas correlation results

trait

 

Correlation coefficient threshold: 0.8
   

 

 

Summary

This view provides a "quick-and-dirty" evaluation of shared genetic effects between two traits by estimating the correlation between p-values of all trait associated SNPs.

Note that pairwise genetic correlations using LD score regression are planned, and computation of these is in progress.

Data sources

  • EpiGraphDB original data created using data from the IEU GWAS database

How to use

Enter the trait you are interested in, the correlation coefficient threshold you want to use, then press "Search". You can adjust the slider and press Search again to update the results.

View the top results in the Network plot tab, access and search the full results in the Table tab, or use the Query tab to find out how to download data using the API.

Examples

 Displays 50 / 198 paths

 

trait_id trait_name cor assoc_trait_id assoc_trait_name
2 Body mass index 0.994728 835 Body mass index
835 Body mass index 0.994728 2 Body mass index
835 Body mass index 0.963881 974 Body mass index
974 Body mass index 0.963881 835 Body mass index
2 Body mass index 0.961907 974 Body mass index
974 Body mass index 0.961907 2 Body mass index
785 Body mass index 0.960467 61 Waist circumference
785 Body mass index 0.954765 60 Waist circumference
835 Body mass index 0.944016 60 Waist circumference
95 Body mass index 0.942652 107 Weight
835 Body mass index 0.941989 61 Waist circumference
2 Body mass index 0.941166 60 Waist circumference
95 Body mass index 0.939927 91 Obesity class 2
95 Body mass index 0.939923 91 Obesity class 2
95 Body mass index 0.939842 90 Obesity class 1
95 Body mass index 0.939836 90 Obesity class 1
95 Body mass index 0.939529 93 Overweight
95 Body mass index 0.939523 93 Overweight
785 Body mass index 0.937331 835 Body mass index
835 Body mass index 0.937331 785 Body mass index
785 Body mass index 0.936657 835 Body mass index
835 Body mass index 0.936657 785 Body mass index
94 Body mass index 0.936239 85 Extreme body mass index
2 Body mass index 0.935848 61 Waist circumference
974 Body mass index 0.931840 60 Waist circumference
84 Body mass index 0.931275 90 Obesity class 1
974 Body mass index 0.930595 61 Waist circumference
974 Body mass index 0.929886 62 Waist circumference
84 Body mass index 0.929709 93 Overweight
84 Body mass index 0.929197 93 Overweight
2 Body mass index 0.927837 785 Body mass index
785 Body mass index 0.927837 2 Body mass index
974 Body mass index 0.926825 63 Waist circumference
974 Body mass index 0.926824 51 Hip circumference
94 Body mass index 0.926323 90 Obesity class 1
835 Body mass index 0.925317 84 Body mass index
84 Body mass index 0.925317 835 Body mass index
94 Body mass index 0.923841 93 Overweight
94 Body mass index 0.923286 91 Obesity class 2
94 Body mass index 0.923263 93 Overweight
94 Body mass index 0.922733 91 Obesity class 2
2 Body mass index 0.922488 84 Body mass index
84 Body mass index 0.922488 2 Body mass index
84 Body mass index 0.920663 974 Body mass index
974 Body mass index 0.920663 84 Body mass index
785 Body mass index 0.919994 51 Hip circumference
785 Body mass index 0.919951 63 Waist circumference
785 Body mass index 0.919132 94 Body mass index
94 Body mass index 0.919132 785 Body mass index
835 Body mass index 0.918026 62 Waist circumference
974 Body mass index 0.917647 93 Overweight
95 Body mass index 0.916953 85 Extreme body mass index
785 Body mass index 0.916642 64 Waist circumference
2 Body mass index 0.916620 62 Waist circumference
95 Body mass index 0.916487 85 Extreme body mass index
835 Body mass index 0.916073 51 Hip circumference
835 Body mass index 0.916056 63 Waist circumference
785 Body mass index 0.915813 84 Body mass index
84 Body mass index 0.915813 785 Body mass index
84 Body mass index 0.915559 61 Waist circumference
84 Body mass index 0.914816 60 Waist circumference
785 Body mass index 0.914047 62 Waist circumference
84 Body mass index 0.913953 94 Body mass index
94 Body mass index 0.913953 84 Body mass index
2 Body mass index 0.912784 63 Waist circumference
2 Body mass index 0.912773 51 Hip circumference
785 Body mass index 0.912466 90 Obesity class 1
974 Body mass index 0.912356 90 Obesity class 1
94 Body mass index 0.912094 51 Hip circumference
94 Body mass index 0.912062 63 Waist circumference
84 Body mass index 0.912004 91 Obesity class 2
84 Body mass index 0.911808 91 Obesity class 2
94 Body mass index 0.910955 61 Waist circumference
785 Body mass index 0.910441 65 Waist circumference
84 Body mass index 0.910436 51 Hip circumference
84 Body mass index 0.910389 63 Waist circumference
84 Body mass index 0.909505 62 Waist circumference
785 Body mass index 0.907622 93 Overweight
835 Body mass index 0.906903 93 Overweight
785 Body mass index 0.906755 93 Overweight
835 Body mass index 0.906723 93 Overweight
974 Body mass index 0.906108 49 Hip circumference
94 Body mass index 0.905575 62 Waist circumference
974 Body mass index 0.905184 48 Hip circumference
785 Body mass index 0.904589 49 Hip circumference
2 Body mass index 0.903898 93 Overweight
94 Body mass index 0.902876 60 Waist circumference
974 Body mass index 0.902323 91 Obesity class 2
835 Body mass index 0.901162 48 Hip circumference
835 Body mass index 0.900870 49 Hip circumference
835 Body mass index 0.900178 90 Obesity class 1
785 Body mass index 0.900138 974 Body mass index
974 Body mass index 0.900138 785 Body mass index
2 Body mass index 0.899567 48 Hip circumference
785 Body mass index 0.898278 48 Hip circumference
95 Body mass index 0.898251 974 Body mass index
974 Body mass index 0.898251 95 Body mass index
2 Body mass index 0.896367 90 Obesity class 1
2 Body mass index 0.896057 49 Hip circumference
785 Body mass index 0.894770 91 Obesity class 2
974 Body mass index 0.894395 50 Hip circumference
785 Body mass index 0.894229 91 Obesity class 2
84 Body mass index 0.893097 95 Body mass index
95 Body mass index 0.893097 84 Body mass index
785 Body mass index 0.892580 85 Extreme body mass index
785 Body mass index 0.892456 85 Extreme body mass index
84 Body mass index 0.892385 95 Body mass index
95 Body mass index 0.892385 84 Body mass index
84 Body mass index 0.891978 85 Extreme body mass index
95 Body mass index 0.891582 62 Waist circumference
94 Body mass index 0.891002 65 Waist circumference
95 Body mass index 0.887389 51 Hip circumference
95 Body mass index 0.887340 63 Waist circumference
94 Body mass index 0.885377 106 Weight
94 Body mass index 0.883170 64 Waist circumference
835 Body mass index 0.880600 91 Obesity class 2
835 Body mass index 0.880314 91 Obesity class 2
974 Body mass index 0.879146 85 Extreme body mass index
84 Body mass index 0.877900 49 Hip circumference
84 Body mass index 0.877456 48 Hip circumference
2 Body mass index 0.873148 91 Obesity class 2
785 Body mass index 0.873025 53 Hip circumference
835 Body mass index 0.872602 94 Body mass index
94 Body mass index 0.872602 835 Body mass index
835 Body mass index 0.872370 50 Hip circumference
94 Body mass index 0.872275 95 Body mass index
95 Body mass index 0.872275 94 Body mass index
94 Body mass index 0.871567 974 Body mass index
974 Body mass index 0.871567 94 Body mass index
94 Body mass index 0.871288 95 Body mass index
95 Body mass index 0.871288 94 Body mass index
2 Body mass index 0.871030 50 Hip circumference
94 Body mass index 0.870951 53 Hip circumference
94 Body mass index 0.870684 49 Hip circumference
94 Body mass index 0.870278 102 Waist circumference
785 Body mass index 0.870182 52 Hip circumference
94 Body mass index 0.867174 52 Hip circumference
974 Body mass index 0.865917 107 Weight
95 Body mass index 0.865868 50 Hip circumference
94 Body mass index 0.865659 48 Hip circumference
835 Body mass index 0.865417 95 Body mass index
95 Body mass index 0.865417 835 Body mass index
835 Body mass index 0.865011 95 Body mass index
95 Body mass index 0.865011 835 Body mass index
2 Body mass index 0.864817 94 Body mass index
94 Body mass index 0.864817 2 Body mass index
2 Body mass index 0.863499 95 Body mass index
95 Body mass index 0.863499 2 Body mass index
95 Body mass index 0.862648 61 Waist circumference
835 Body mass index 0.861192 85 Extreme body mass index
95 Body mass index 0.860552 60 Waist circumference
84 Body mass index 0.858188 50 Hip circumference
785 Body mass index 0.857727 50 Hip circumference
835 Body mass index 0.856492 64 Waist circumference
84 Body mass index 0.855865 64 Waist circumference
785 Body mass index 0.854098 95 Body mass index
95 Body mass index 0.854098 785 Body mass index
2 Body mass index 0.853132 85 Extreme body mass index
785 Body mass index 0.852846 95 Body mass index
95 Body mass index 0.852846 785 Body mass index
94 Body mass index 0.852438 50 Hip circumference
84 Body mass index 0.851655 107 Weight
84 Body mass index 0.851517 65 Waist circumference
2 Body mass index 0.849284 64 Waist circumference
974 Body mass index 0.847677 64 Waist circumference
95 Body mass index 0.847327 48 Hip circumference
95 Body mass index 0.846979 49 Hip circumference
94 Body mass index 0.845181 103 Waist circumference
835 Body mass index 0.844560 65 Waist circumference
94 Body mass index 0.844409 92 Obesity class 3
94 Body mass index 0.844197 92 Obesity class 3
94 Body mass index 0.841401 107 Weight
974 Body mass index 0.840932 65 Waist circumference
2 Body mass index 0.837487 107 Weight
835 Body mass index 0.836680 107 Weight
95 Body mass index 0.835176 65 Waist circumference
2 Body mass index 0.835100 65 Waist circumference
95 Body mass index 0.834830 64 Waist circumference
785 Body mass index 0.833121 102 Waist circumference
94 Body mass index 0.828618 108 Waist-to-hip ratio
84 Body mass index 0.828588 52 Hip circumference
84 Body mass index 0.827787 53 Hip circumference
974 Body mass index 0.825330 52 Hip circumference
835 Body mass index 0.825316 52 Hip circumference
785 Body mass index 0.824777 92 Obesity class 3
974 Body mass index 0.823465 53 Hip circumference
95 Body mass index 0.823378 53 Hip circumference
785 Body mass index 0.823353 92 Obesity class 3
785 Body mass index 0.823205 103 Waist circumference
84 Body mass index 0.823204 106 Weight
94 Body mass index 0.822696 999 Body fat
835 Body mass index 0.820006 53 Hip circumference
2 Body mass index 0.819379 52 Hip circumference
785 Body mass index 0.817851 106 Weight
95 Body mass index 0.816353 52 Hip circumference
2 Body mass index 0.812587 53 Hip circumference
785 Body mass index 0.810327 999 Body fat
785 Body mass index 0.806603 107 Weight
MATCH (trait:Gwas)-[gc:GWAS_COR]-(assoc_trait:Gwas) WHERE trait.trait = "Body mass index" AND gc.cor > 0.8 RETURN trait.id AS trait_id, trait.trait AS trait_name, gc.cor AS cor, assoc_trait.id AS assoc_trait_id, assoc_trait.trait AS assoc_trait_name ORDER BY cor DESC ;
curl -X 'GET' -H 'Accept: */*' -H 'Accept-Encoding: gzip, deflate' -H 'Connection: keep-alive' -H 'User-Agent: python-requests/2.22.0' 'http://api.epigraphdb.org_private/gwas_cor?trait=Body+mass+index&cor_coef_threshold=0.8'